Use of a multiplex PCR/RT‐PCR approach to assess the viral causes of influenza‐like illnesses in Cambodia during three consecutive dry seasons
Identifieur interne : 000222 ( France/Analysis ); précédent : 000221; suivant : 000223Use of a multiplex PCR/RT‐PCR approach to assess the viral causes of influenza‐like illnesses in Cambodia during three consecutive dry seasons
Auteurs : Carole Buecher [Cambodge] ; Sek Mardy [Cambodge] ; Wei Wang [République populaire de Chine] ; Veasna Duong [Cambodge] ; Sirenda Vong [Cambodge] ; Monica Naughtin [Cambodge] ; Astrid Vabret [France] ; François Freymuth [France] ; Vincent Deubel [République populaire de Chine] ; Philippe Buchy [Cambodge]Source :
- Journal of Medical Virology [ 0146-6615 ] ; 2010-10.
Descripteurs français
- KwdFr :
- Adolescent, Adulte, Adulte d'âge moyen, Cambodge (épidémiologie), Enfant, Enfant d'âge préscolaire, Femelle, Humains, Jeune adulte, Maladies de l'appareil respiratoire (virologie), Maladies de l'appareil respiratoire (épidémiologie), Maladies virales (virologie), Maladies virales (épidémiologie), Mâle, Nourrisson, Prévalence, RT-PCR (), Sujet âgé, Virologie (), Virus (), Virus (isolement et purification).
- MESH :
- isolement et purification : Virus.
- virologie : Maladies de l'appareil respiratoire, Maladies virales.
- épidémiologie : Cambodge, Maladies de l'appareil respiratoire, Maladies virales.
- Pascal (Inist)
- Wicri :
- geographic : Adolescent, Adulte, Adulte d'âge moyen, Cambodge, Enfant, Enfant d'âge préscolaire, Femelle, Humains, Jeune adulte, Mâle, Nourrisson, Prévalence, RT-PCR, Sujet âgé, Virologie, Virus.
- topic : Adulte, Enfant.
English descriptors
- KwdEn :
- Adolescent, Adult, Aged, Cambodia (epidemiology), Child, Child, Preschool, Female, Flulike syndrome, Humans, Infant, Male, Middle Aged, Multiplex polymerase chain reaction, Prevalence, Respiratory Tract Diseases (epidemiology), Respiratory Tract Diseases (virology), Reverse Transcriptase Polymerase Chain Reaction (methods), Reverse transcription polymerase chain reaction, Virology (methods), Virus Diseases (epidemiology), Virus Diseases (virology), Viruses (classification), Viruses (isolation & purification), Young Adult.
- MESH :
- geographic , epidemiology : Cambodia.
- classification : Viruses.
- epidemiology : Respiratory Tract Diseases, Virus Diseases.
- isolation & purification : Viruses.
- methods : Reverse Transcriptase Polymerase Chain Reaction, Virology.
- virology : Respiratory Tract Diseases, Virus Diseases.
- Teeft :
- Adolescent, Adult, Aged, Amplicon size, Assay, Asymptomatic, Asymptomatic individuals, Asymptomatic subjects, Bocavirus, Cambodia, Child, Child, Preschool, Clin, Clinical samples, Clinical specimens, Control group, Coronavirus, Echevarria, Erdman, Female, Freymuth, Hbov, Hcov, Healthy individuals, Hemi, Hku1, Hmpv, Hmpv infections, Hong kong, Hrhv, Human bocavirus, Human coronavirus, Human viruses, Humans, Illness patients, Infant, Infection, Institut pasteur, Male, Microbiol, Middle Aged, Multiplex, Multiplex methods, Novel coronavirus, Other viruses, Patient group, Polymerase, Polymerase chain reaction, Prevalence, Primer, Primer sequences, Respiratory infections, Respiratory syncytial virus infection, Respiratory syndrome, Respiratory viruses, Rhinovirus, Simultaneous detection, Table iiic, Total samples, Tract infections, Unpublished work, Vabret, Viral, Viral causes, Viral infections, Viral transport medium, Virol, Virus, Young Adult, Young children.
- mix :
Abstract
Acute respiratory infections are a major cause of mortality and morbidity worldwide. Using multiplex PCR/RT‐PCR methods for the detection of 18 respiratory viruses, the circulation of those viruses during 3 consecutive dry seasons in Cambodia was described. Among 234 patients who presented with influenza‐like illness, 35.5% were positive for at least one virus. Rhinoviruses (43.4%), parainfluenza (31.3%) viruses and coronaviruses (21.7%) were the most frequently detected viruses. Influenza A virus, parainfluenza virus 4 and SARS‐coronavirus were not detected during the study period. Ninety apparently healthy individuals were included as controls and 10% of these samples tested positive for one or more respiratory viruses. No significant differences were observed in frequency and in virus copy numbers for rhinovirus detection between symptomatic and asymptomatic groups. This study raises questions about the significance of the detection of some respiratory viruses, especially using highly sensitive methods, given their presence in apparently healthy individuals. The link between the presence of the virus and the origin of the illness is therefore unclear. J. Med. Virol. 82:1762–1772, 2010. © 2010 Wiley‐Liss, Inc.
Url:
- https://api.istex.fr/ark:/67375/WNG-G26P0K6Z-D/fulltext.pdf
- https://hal-riip.archives-ouvertes.fr/pasteur-00808228
DOI: 10.1002/jmv.21891
Affiliations:
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ISTEX:B2123CCE081E79803DEC73953E9F26D9C0F83A69Le document en format XML
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sort="Freymuth, Francois" uniqKey="Freymuth F" first="François" last="Freymuth">François Freymuth</name><affiliation wicri:level="1"><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire de Virologie Humaine et Moléculaire, Centre Hospitalier Universitaire, Caen, Cedex</wicri:regionArea><wicri:noRegion>Cedex</wicri:noRegion><wicri:noRegion>Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Deubel, Vincent" sort="Deubel, Vincent" uniqKey="Deubel V" first="Vincent" last="Deubel">Vincent Deubel</name><affiliation wicri:level="1"><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai</wicri:regionArea><wicri:noRegion>Shanghai</wicri:noRegion></affiliation></author><author><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name><affiliation wicri:level="1"><country xml:lang="fr">Cambodge</country><wicri:regionArea>Institut Pasteur in Cambodia, Phnom Penh</wicri:regionArea><wicri:noRegion>Phnom Penh</wicri:noRegion></affiliation><affiliation></affiliation><affiliation wicri:level="1"><country xml:lang="fr" wicri:curation="lc">Cambodge</country><wicri:regionArea>Correspondence address: Institut Pasteur in Cambodia, 5 Monivong blvd, P.O. Box 983, Phnom Penh</wicri:regionArea><wicri:noRegion>Phnom Penh</wicri:noRegion></affiliation></author></analytic><monogr></monogr><series><title level="j" type="main">Journal of Medical Virology</title><title level="j" type="alt">JOURNAL OF MEDICAL VIROLOGY</title><idno type="ISSN">0146-6615</idno><idno type="eISSN">1096-9071</idno><imprint><biblScope unit="vol">82</biblScope><biblScope unit="issue">10</biblScope><biblScope unit="page" from="1762">1762</biblScope><biblScope unit="page" to="1772">1772</biblScope><biblScope unit="page-count">11</biblScope><publisher>Wiley Subscription Services, Inc., A Wiley Company</publisher><pubPlace>Hoboken</pubPlace><date type="published" when="2010-10">2010-10</date></imprint><idno type="ISSN">0146-6615</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0146-6615</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Cambodia (epidemiology)</term><term>Child</term><term>Child, Preschool</term><term>Female</term><term>Flulike syndrome</term><term>Humans</term><term>Infant</term><term>Male</term><term>Middle Aged</term><term>Multiplex polymerase chain reaction</term><term>Prevalence</term><term>Respiratory Tract Diseases (epidemiology)</term><term>Respiratory Tract Diseases (virology)</term><term>Reverse Transcriptase Polymerase Chain Reaction (methods)</term><term>Reverse transcription polymerase chain reaction</term><term>Virology (methods)</term><term>Virus Diseases (epidemiology)</term><term>Virus Diseases (virology)</term><term>Viruses (classification)</term><term>Viruses (isolation & purification)</term><term>Young Adult</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Adolescent</term><term>Adulte</term><term>Adulte d'âge moyen</term><term>Cambodge (épidémiologie)</term><term>Enfant</term><term>Enfant d'âge préscolaire</term><term>Femelle</term><term>Humains</term><term>Jeune adulte</term><term>Maladies de l'appareil respiratoire (virologie)</term><term>Maladies de l'appareil respiratoire (épidémiologie)</term><term>Maladies virales (virologie)</term><term>Maladies virales (épidémiologie)</term><term>Mâle</term><term>Nourrisson</term><term>Prévalence</term><term>RT-PCR ()</term><term>Sujet âgé</term><term>Virologie ()</term><term>Virus ()</term><term>Virus (isolement et purification)</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Cambodia</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Respiratory Tract Diseases</term><term>Virus Diseases</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Virology</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Maladies de l'appareil respiratoire</term><term>Maladies virales</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Respiratory Tract Diseases</term><term>Virus Diseases</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Cambodge</term><term>Maladies de l'appareil respiratoire</term><term>Maladies virales</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Réaction chaîne polymérase RT</term><term>Réaction chaîne polymérase multiplex</term><term>Syndrome pseudogrippal</term></keywords><keywords scheme="Teeft" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Amplicon size</term><term>Assay</term><term>Asymptomatic</term><term>Asymptomatic individuals</term><term>Asymptomatic subjects</term><term>Bocavirus</term><term>Cambodia</term><term>Child</term><term>Child, Preschool</term><term>Clin</term><term>Clinical samples</term><term>Clinical specimens</term><term>Control group</term><term>Coronavirus</term><term>Echevarria</term><term>Erdman</term><term>Female</term><term>Freymuth</term><term>Hbov</term><term>Hcov</term><term>Healthy individuals</term><term>Hemi</term><term>Hku1</term><term>Hmpv</term><term>Hmpv infections</term><term>Hong kong</term><term>Hrhv</term><term>Human bocavirus</term><term>Human coronavirus</term><term>Human viruses</term><term>Humans</term><term>Illness patients</term><term>Infant</term><term>Infection</term><term>Institut pasteur</term><term>Male</term><term>Microbiol</term><term>Middle Aged</term><term>Multiplex</term><term>Multiplex methods</term><term>Novel coronavirus</term><term>Other viruses</term><term>Patient group</term><term>Polymerase</term><term>Polymerase chain reaction</term><term>Prevalence</term><term>Primer</term><term>Primer sequences</term><term>Respiratory infections</term><term>Respiratory syncytial virus infection</term><term>Respiratory syndrome</term><term>Respiratory viruses</term><term>Rhinovirus</term><term>Simultaneous detection</term><term>Table iiic</term><term>Total samples</term><term>Tract infections</term><term>Unpublished work</term><term>Vabret</term><term>Viral</term><term>Viral causes</term><term>Viral infections</term><term>Viral transport medium</term><term>Virol</term><term>Virus</term><term>Young Adult</term><term>Young children</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Adolescent</term><term>Adulte</term><term>Adulte d'âge moyen</term><term>Cambodge</term><term>Enfant</term><term>Enfant d'âge préscolaire</term><term>Femelle</term><term>Humains</term><term>Jeune adulte</term><term>Mâle</term><term>Nourrisson</term><term>Prévalence</term><term>RT-PCR</term><term>Sujet âgé</term><term>Virologie</term><term>Virus</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Adulte</term><term>Enfant</term></keywords><keywords scheme="mix" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Cambodia</term><term>Child</term><term>Female</term><term>Humans</term><term>Infant</term><term>Male</term><term>Middle Aged</term><term>Preschool</term><term>Prevalence</term><term>Respiratory Tract Diseases</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Virology</term><term>Virus Diseases</term><term>Viruses</term><term>Young Adult</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Acute respiratory infections are a major cause of mortality and morbidity worldwide. Using multiplex PCR/RT‐PCR methods for the detection of 18 respiratory viruses, the circulation of those viruses during 3 consecutive dry seasons in Cambodia was described. Among 234 patients who presented with influenza‐like illness, 35.5% were positive for at least one virus. Rhinoviruses (43.4%), parainfluenza (31.3%) viruses and coronaviruses (21.7%) were the most frequently detected viruses. Influenza A virus, parainfluenza virus 4 and SARS‐coronavirus were not detected during the study period. Ninety apparently healthy individuals were included as controls and 10% of these samples tested positive for one or more respiratory viruses. No significant differences were observed in frequency and in virus copy numbers for rhinovirus detection between symptomatic and asymptomatic groups. This study raises questions about the significance of the detection of some respiratory viruses, especially using highly sensitive methods, given their presence in apparently healthy individuals. The link between the presence of the virus and the origin of the illness is therefore unclear. J. Med. Virol. 82:1762–1772, 2010. © 2010 Wiley‐Liss, Inc.</div></front></TEI><affiliations><list><country><li>Cambodge</li><li>France</li><li>République populaire de Chine</li></country></list><tree><country name="Cambodge"><noRegion><name sortKey="Buecher, Carole" sort="Buecher, Carole" uniqKey="Buecher C" first="Carole" last="Buecher">Carole Buecher</name></noRegion><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name><name sortKey="Duong, Veasna" sort="Duong, Veasna" uniqKey="Duong V" first="Veasna" last="Duong">Veasna Duong</name><name sortKey="Mardy, Sek" sort="Mardy, Sek" uniqKey="Mardy S" first="Sek" last="Mardy">Sek Mardy</name><name sortKey="Naughtin, Monica" sort="Naughtin, Monica" uniqKey="Naughtin M" first="Monica" last="Naughtin">Monica Naughtin</name><name sortKey="Vong, Sirenda" sort="Vong, Sirenda" uniqKey="Vong S" first="Sirenda" last="Vong">Sirenda Vong</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Wei" sort="Wang, Wei" uniqKey="Wang W" first="Wei" last="Wang">Wei Wang</name></noRegion><name sortKey="Deubel, Vincent" sort="Deubel, Vincent" uniqKey="Deubel V" first="Vincent" last="Deubel">Vincent Deubel</name></country><country name="France"><noRegion><name sortKey="Vabret, Astrid" sort="Vabret, Astrid" uniqKey="Vabret A" first="Astrid" last="Vabret">Astrid Vabret</name></noRegion><name sortKey="Freymuth, Francois" sort="Freymuth, Francois" uniqKey="Freymuth F" first="François" last="Freymuth">François Freymuth</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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